BIBI IV - Advanced mode

Some useful informations

Most of the options are straigthforward understandable. Some BIBI IV specific tricks are explicited here.

You have much more database choices and parameters selection (and up to 500 extracted sequences! ).

Query sequence or species name

SSU-rDNA 16S Fasta Sequence

Species Name

Selection of the Database

Read the information on the databases

Selection of parameters related to the alignment process

Number of recruited sequences

Selection of the aligner

Trimming specification

Mitigation of the query errors

this is explained here

Selection of the tree-related parameters

Level of polytomy

Re-rooting

Send to BIBI IV

Run (or test)

Results

Results are looking like those of the One click mode.

Remember that there is only one database selected in the expert approach (no composite tree available) and no automatic optimization of the tree topology.